awesome-open-science
some links to projects/tools related to "open science". add to this by forking and pull-requesting.
in a similar vein to awesome-awesomeness.
computation environments
- Sage Math Cloud: Provides Sage, Python, and other environments for computing on the cloud; also provides terminal access and git commands for cloning repositories.
document writing
- Authorea: Backed by Pandoc and Git for collaborative document writing.
- ShareLaTeX: Online collaborative LaTeX editor
- WriteLaTeX: Online collaborative LaTeX editor
discovery
data management
- Dat-Data: Dat is an open source project that provides a streaming interface between every file format and data storage backend.
reproducibility
- Figshare: Platform for making research artefacts uploadable and citable.
- Reproduced papers: Collection of links to various researchers reproducing particular papers.
- Zenodo: Platform to host versions of code that can be cited; can be linked to GitHub.
project management
- GitHub: (Naturally.)
- Open science framework: Collect together various sources (GitHub, DropBox, etc) into one spot.
- Trello: Keep track of to-do items in various lists of lists; keep track of figures, comments, questions, issues, etc.
organisations
journals/preprint servers
- ArXiv: e-Print archive
- ECCC: The Electronic Colloquium on Computational Complexity - new papers in TCS.
- SciRate: Front for the arXiv, with voting and comments and accounts.
training/meetups
community wikis
- Complexity Zoo: Definitions of complexity classes in theoreticaly computer science.
- nLab: A wiki-lab for collaborative work on Mathematics, Physics and Philosophy — especially from the n-point of view: insofar as these subjects are usefully treated with tools and notions of category theory or higher category theory.
books
- Probabilistic Programming and Bayesian Methods for Hackers: an intro to Bayesian methods and probabilistic programming from a computation/understanding-first, mathematics-second point of view. Uses python with pyMC for visualizing what's going on.